If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ), 'gf_id' => 'HOM05D000595', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000595' ), 'data_identifier' => 'HOM05D000595', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000595', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31400' => 'bna', 'A01p31410' => 'bna', 'A02p15170' => 'bna', 'A03p05130' => 'bna', 'A06p30450' => 'bna', 'A07p31950' => 'bna', 'A07p34950' => 'bna', 'A09p08420' => 'bna', 'A10p03330' => 'bna', 'Aa31LG10G5270' => 'aar', 'Aa31LG1G18050' => 'aar', 'Aa31LG1G19900' => 'aar', 'Aa31LG1G24210' => 'aar', 'Aa31LG5G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3621' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2230' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5484' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3272' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.804' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.462' => 'aag', 'Actinidia02452' => 'ach', 'Actinidia04411' => 'ach', 'Actinidia06586' => 'ach', 'Actinidia13663' => 'ach', 'Actinidia20042' => 'ach', 'Actinidia32782' => 'ach', 'Actinidia33191' => 'ach', 'Actinidia33192' => 'ach', 'Actinidia33643' => 'ach', 'Actinidia33645' => 'ach', 'Actinidia37010' => 'ach', 'Actinidia38371' => 'ach', 'Ah.02g117460' => 'amhyb', 'Ah.03g137740' => 'amhyb', 'Ah.06g191160' => 'amhyb', 'Ah.07g206430' => 'amhyb', 'Ah.07g206440' => 'amhyb', 'Ah.13g069280' => 'amhyb', 'Ah.13g078130' => 'amhyb', 'AL1G14620' => 'aly', 'AL2G27460' => 'aly', 'AL3G38380' => 'aly', 'AL5G20720' => 'aly', 'AL5G24630' => 'aly', 'AL6G22450' => 'aly', 'AL8G41070' => 'aly', 'Aqoxy1G01549' => 'aox', 'Aqoxy1G01550' => 'aox', 'Aqoxy2G03878' => 'aox', 'Aqoxy3G00773' => 'aox', 'Aqoxy3G02180' => 'aox', 'Aqoxy3G03952' => 'aox', 'Aqoxy6G00334' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1PFK72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4542IJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55M78P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.897VZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JPD0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJDV4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLZI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1W91V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2GMYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJS23T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G7HRZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I102WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFLY9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG0Q3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQH3GN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNJC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2N30X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF88UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W977IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV6HX4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1NGKZ' => 'arhy', 'AT1G04900' => 'ath', 'AT1G68560' => 'ath', 'AT3G23640' => 'ath', 'AT3G45940' => 'ath', 'AT5G11720' => 'ath', 'AT5G63840' => 'ath', 'ATR0739G007' => 'atr', 'ATR0829G165' => 'atr', 'ATR1098G010' => 'atr', 'ATR1125G040' => 'atr', 'ATR1125G081' => 'atr', 'ATR1125G118' => 'atr', 'ATR1145G018' => 'atr', 'Atru.chr1.3629' => 'acertr', 'Atru.chr1.3633' => 'acertr', 'Atru.chr10.306' => 'acertr', 'Atru.chr10.307' => 'acertr', 'Atru.chr10.495' => 'acertr', 'Atru.chr11.1272' => 'acertr', 'Atru.chr11.1273' => 'acertr', 'Atru.chr4.1013' => 'acertr', 'Atru.chr4.1710' => 'acertr', 'Atru.chr6.1509' => 'acertr', 'AUR62000531' => 'cqu', 'AUR62002880' => 'cqu', 'AUR62007422' => 'cqu', 'AUR62020816' => 'cqu', 'AUR62021097' => 'cqu', 'AUR62021100' => 'cqu', 'AUR62027310' => 'cqu', 'AUR62031439' => 'cqu', 'AUR62031441' => 'cqu', 'AUR62032918' => 'cqu', 'AUR62032919' => 'cqu', 'AUR62035240' => 'cqu', 'BcaB01g05461' => 'bca', 'BcaB01g05462' => 'bca', 'BcaB02g06893' => 'bca', 'BcaB02g09773' => 'bca', 'BcaB03g15426' => 'bca', 'BcaB03g15841' => 'bca', 'BcaB04g20429' => 'bca', 'BcaB04g20430' => 'bca', 'BcaB04g20431' => 'bca', 'BcaB05g24397' => 'bca', 'BcaC03g14968' => 'bca', 'BcaC04g23351' => 'bca', 'BcaC08g45964' => 'bca', 'BcaC08g46296' => 'bca', 'BolC1t03956H' => 'bol', 'BolC1t03957H' => 'bol', 'BolC2t08583H' => 'bol', 'BolC3t13104H' => 'bol', 'BolC3t18518H' => 'bol', 'BolC5t29087H' => 'bol', 'BolC6t38856H' => 'bol', 'BolC6t39288H' => 'bol', 'BolC9t53865H' => 'bol', 'BraA01t03265Z' => 'bra', 'BraA01t03266Z' => 'bra', 'BraA02t06582Z' => 'bra', 'BraA03t09851Z' => 'bra', 'BraA06t25994Z' => 'bra', 'BraA07t30823Z' => 'bra', 'BraA09t36492Z' => 'bra', 'BraA10t42609Z' => 'bra', 'C01p38650' => 'bna', 'C01p39990' => 'bna', 'C01p40000' => 'bna', 'C02p24920' => 'bna', 'C03p05920' => 'bna', 'C03p62610' => 'bna', 'C05p03050' => 'bna', 'C06p37540' => 'bna', 'C06p41360' => 'bna', 'C09p09530' => 'bna', 'CAN.G1731.4' => 'can', 'CAN.G1731.5' => 'can', 'CAN.G186.46' => 'can', 'CAN.G186.47' => 'can', 'CAN.G186.48' => 'can', 'CAN.G186.50' => 'can', 'CAN.G186.51' => 'can', 'CAN.G186.52' => 'can', 'CAN.G439.39' => 'can', 'CAN.G439.41' => 'can', 'CAN.G656.15' => 'can', 'CAN.G756.34' => 'can', 'CAN.G767.41' => 'can', 'CANSAT01G0742' => 'cansat', 'CANSAT01G2190' => 'cansat', 'CANSAT21G1418' => 'cansat', 'CANSAT35G0362' => 'cansat', 'CARHR000110' => 'chi', 'CARHR004300' => 'chi', 'CARHR061350' => 'chi', 'CARHR099600' => 'chi', 'CARHR154320' => 'chi', 'CARHR201500' => 'chi', 'CARHR277740' => 'chi', 'Carub.0001s0414' => 'cru', 'Carub.0002s1508' => 'cru', 'Carub.0003s2390' => 'cru', 'Carub.0003s2391' => 'cru', 'Carub.0006s1022' => 'cru', 'Carub.0008s2461' => 'cru', 'Ca_00886_v3' => 'car', 'Ca_05208_v3' => 'car', 'Ca_16992_v3' => 'car', 'Ca_17020_v3' => 'car', 'Ca_25085_v3' => 'car', 'CBR_g23048' => 'cbr', 'CBR_g24401' => 'cbr', 'CBR_g36951' => 'cbr', 'Cc00_g19580' => 'ccan', 'Cc00_g34630' => 'ccan', 'Cc03_g07770' => 'ccan', 'Cc08_g05410' => 'ccan', 'Cc08_g05420' => 'ccan', 'Cc08_g05430' => 'ccan', 'Cc09_g07270' => 'ccan', 'Cc09_g07290' => 'ccan', 'Cc11_g05760' => 'ccan', 'Cc11_g05780' => 'ccan', 'Cc11_g10230' => 'ccan', 'Cc11_g10240' => 'ccan', 'CDE01G0028' => 'cde', 'CDE04G0793' => 'cde', 'CDE04G1006' => 'cde', 'CDE07G1880' => 'cde', 'CDE09G0179' => 'cde', 'CDE10G0024' => 'cde', 'CDE10G0087' => 'cde', 'CDE10G0541' => 'cde', 'CDE10G0670' => 'cde', 'Cfa000750' => 'cfa', 'Cfa002191' => 'cfa', 'Cfa012654' => 'cfa', 'Cfa012656' => 'cfa', 'Cfa012657' => 'cfa', 'Cfa018602' => 'cfa', 'Cfa021792' => 'cfa', 'Cfa022406' => 'cfa', 'Cfa024289' => 'cfa', 'Ciclev10000152m.g' => 'ccl', 'Ciclev10000200m.g' => 'ccl', 'Ciclev10000404m.g' => 'ccl', 'Ciclev10002552m.g' => 'ccl', 'Ciclev10005247m.g' => 'ccl', 'Ciclev10011016m.g' => 'ccl', 'Ciclev10013535m.g' => 'ccl', 'Ciclev10013908m.g' => 'ccl', 'Ciclev10014196m.g' => 'ccl', 'Ciclev10014274m.g' => 'ccl', 'Ciclev10017610m.g' => 'ccl', 'Ciclev10030449m.g' => 'ccl', 'Ciclev10033422m.g' => 'ccl', 'CiPaw.01G121800' => 'cil', 'CiPaw.01G121900' => 'cil', 'CiPaw.03G117300' => 'cil', 'CiPaw.04G078700' => 'cil', 'CiPaw.09G149600' => 'cil', 'CiPaw.09G149700' => 'cil', 'CiPaw.11G104000' => 'cil', 'CiPaw.15G084100' => 'cil', 'CiPaw.16G064500' => 'cil', 'ClCG01G008960' => 'cla', 'ClCG02G000080' => 'cla', 'ClCG05G003330' => 'cla', 'ClCG05G022770' => 'cla', 'ClCG08G005300' => 'cla', 'ClCG10G000900' => 'cla', 'COL.COLO4_06174' => 'col', 'COL.COLO4_07916' => 'col', 'COL.COLO4_09879' => 'col', 'COL.COLO4_12071' => 'col', 'COL.COLO4_24689' => 'col', 'COL.COLO4_26842' => 'col', 'COL.COLO4_38454' => 'col', 'Cpa.g.c48289' => 'cpa', 'Cpa.g.sc1.180' => 'cpa', 'Cpa.g.sc37.16' => 'cpa', 'Cpa.g.sc59.134' => 'cpa', 'Cpa.g.sc71.50' => 'cpa', 'Cpa.g.sc71.52' => 'cpa', 'Cpa.g.sc71.54' => 'cpa', 'Cpa.g.sc71.57' => 'cpa', 'Cre03.g190500' => 'cre', 'Cre03.g194700' => 'cre', 'Cre13.g584700' => 'cre', 'CsaV3_1G042950' => 'csa', 'CsaV3_1G046750' => 'csa', 'CsaV3_2G019750' => 'csa', 'CsaV3_3G000980' => 'csa', 'CsaV3_5G034260' => 'csa', 'CsaV3_6G003480' => 'csa', 'CsaV3_6G039250' => 'csa', 'CsaV3_6G039270' => 'csa', 'CSS0001846' => 'camsi', 'CSS0006745' => 'camsi', 'CSS0010238' => 'camsi', 'CSS0010328' => 'camsi', 'CSS0015577' => 'camsi', 'CSS0016368' => 'camsi', 'CSS0017609' => 'camsi', 'CSS0018432' => 'camsi', 'CSS0026923' => 'camsi', 'CSS0032199' => 'camsi', 'CSS0038244' => 'camsi', 'CSS0043306' => 'camsi', 'CSS0050335' => 'camsi', 'DCAR_002262' => 'dca', 'DCAR_003816' => 'dca', 'DCAR_004308' => 'dca', 'DCAR_004519' => 'dca', 'DCAR_004520' => 'dca', 'DCAR_007240' => 'dca', 'DCAR_019989' => 'dca', 'DCAR_022540' => 'dca', 'DCAR_023662' => 'dca', 'DCAR_026731' => 'dca', 'Dinv14497' => 'din', 'Dinv21094' => 'din', 'Dinv21095' => 'din', 'Dinv26337' => 'din', 'Dinv29591' => 'din', 'Dinv30344' => 'din', 'Dinv34979' => 'din', 'Dinv37419' => 'din', 'Duzib116G0431' => 'dzi', 'Duzib116G0855' => 'dzi', 'Duzib147G1350' => 'dzi', 'Duzib151G0403' => 'dzi', 'Duzib192G0737' => 'dzi', 'Duzib251G0431' => 'dzi', 'Duzib264G0377' => 'dzi', 'Duzib268G0359' => 'dzi', 'ECA232G4265' => 'eca', 'ECA233G3512' => 'eca', 'ECA233G5324' => 'eca', 'ECA233G6181' => 'eca', 'ECA234G4000' => 'eca', 'ECA246G0927' => 'eca', 'ECA246G1180' => 'eca', 'EL10Ac3g05393' => 'bvu', 'EL10Ac3g05394' => 'bvu', 'EL10Ac3g05397' => 'bvu', 'EL10Ac3g05408' => 'bvu', 'EL10Ac3g07487' => 'bvu', 'EL10Ac4g09027' => 'bvu', 'EL10Ac4g09639' => 'bvu', 'EL10Ac5g11905' => 'bvu', 'EL10Ac6g14425' => 'bvu', 'Eucgr.E01209' => 'egr', 'Eucgr.E01212' => 'egr', 'Eucgr.G00330' => 'egr', 'Eucgr.G00331' => 'egr', 'Eucgr.G02327' => 'egr', 'Eucgr.H02785' => 'egr', 'Eucgr.I00112' => 'egr', 'Eucgr.K01949' => 'egr', 'Eucgr.K01950' => 'egr', 'Eucgr.K01952' => 'egr', 'Eucgr.K01953' => 'egr', 'Eucgr.K01954' => 'egr', 'Eucgr.K01956' => 'egr', 'Eucgr.K01957' => 'egr', 'Eucgr.K01958' => 'egr', 'Eucgr.K01959' => 'egr', 'Eucgr.K01960' => 'egr', 'Eucgr.K01961' => 'egr', 'Eucgr.K01962' => 'egr', 'Eucgr.K01964' => 'egr', 'Eucgr.L00881' => 'egr', 'Eucgr.L01888' => 'egr', 'Eucgr.L01889' => 'egr', 'Eucgr.L02199' => 'egr', 'FAN07G0189' => 'fan', 'FAN07G0687' => 'fan', 'FAN07G1333' => 'fan', 'FAN12G2005' => 'fan', 'FAN12G2275' => 'fan', 'FAN12G3023' => 'fan', 'FAN13G2264' => 'fan', 'FAN16G0455' => 'fan', 'FAN16G2623' => 'fan', 'FAN17G1124' => 'fan', 'FAN18G1127' => 'fan', 'FAN19G0230' => 'fan', 'FAN19G1425' => 'fan', 'FAN19G1967' => 'fan', 'FAN21G3718' => 'fan', 'FAN22G0384' => 'fan', 'FAN23G1462' => 'fan', 'FAN23G3135' => 'fan', 'FAN25G2792' => 'fan', 'FAN26G0595' => 'fan', 'FAN28G1586' => 'fan', 'FvH4_1g23291' => 'fve', 'FvH4_1g25070' => 'fve', 'FvH4_1g28641' => 'fve', 'FvH4_3g11610' => 'fve', 'FvH4_3g11611' => 'fve', 'FvH4_4g15840' => 'fve', 'FvH4_4g27500' => 'fve', 'FvH4_5g24150' => 'fve', 'Glyma.01G081300' => 'gma', 'Glyma.04G123900' => 'gma', 'Glyma.04G209000' => 'gma', 'Glyma.06G156902' => 'gma', 'Glyma.08G262800' => 'gma', 'Glyma.09G028000' => 'gma', 'Glyma.10G274700' => 'gma', 'Glyma.15G133500' => 'gma', 'Glyma.15G133600' => 'gma', 'Glyma.15G133700' => 'gma', 'Glyma.15G133766' => 'gma', 'Glyma.15G133832' => 'gma', 'Gohir.A02G091200' => 'ghi', 'Gohir.A03G062851' => 'ghi', 'Gohir.A05G110800' => 'ghi', 'Gohir.A10G123700' => 'ghi', 'Gohir.A11G057900' => 'ghi', 'Gohir.A11G320100' => 'ghi', 'Gohir.D02G109400' => 'ghi', 'Gohir.D05G111200' => 'ghi', 'Gohir.D10G142300' => 'ghi', 'Gohir.D11G062100' => 'ghi', 'Gohir.D11G339200' => 'ghi', 'Gohir.D12G170900' => 'ghi', 'Gohir.D13G067000' => 'ghi', 'Gorai.005G124100' => 'gra', 'Gorai.007G066900' => 'gra', 'Gorai.007G368700' => 'gra', 'Gorai.008G183500' => 'gra', 'Gorai.009G115500' => 'gra', 'Gorai.011G158900' => 'gra', 'Gorai.013G076300' => 'gra', 'GSVIVG01000526001' => 'vvi', 'GSVIVG01000528001' => 'vvi', 'GSVIVG01011904001' => 'vvi', 'GSVIVG01013642001' => 'vvi', 'GSVIVG01020935001' => 'vvi', 'GSVIVG01022815001' => 'vvi', 'GSVIVG01024287001' => 'vvi', 'GSVIVG01036945001' => 'vvi', 'GSVIVG01036946001' => 'vvi', 'GSVIVG01036947001' => 'vvi', 'GSVIVG01037959001' => 'vvi', 'HanXRQChr02g0053981' => 'han', 'HanXRQChr02g0054001' => 'han', 'HanXRQChr07g0185731' => 'han', 'HanXRQChr08g0213821' => 'han', 'HanXRQChr11g0324831' => 'han', 'HanXRQChr12g0380551' => 'han', 'HanXRQChr16g0529301' => 'han', 'HanXRQChr17g0537211' => 'han', 'Haze_05975' => 'cav', 'Haze_05978' => 'cav', 'Haze_07993' => 'cav', 'Haze_07994' => 'cav', 'Haze_07995' => 'cav', 'Haze_10399' => 'cav', 'Haze_11606' => 'cav', 'Haze_17406' => 'cav', 'Haze_17474' => 'cav', 'Haze_25365' => 'cav', 'Haze_26722' => 'cav', 'Hma1.2p1_0016F.1_g011050' => 'hma', 'Hma1.2p1_0061F.1_g034030' => 'hma', 'Hma1.2p1_0189F.1_g082510' => 'hma', 'Hma1.2p1_0406F.1_g146180' => 'hma', 'Hma1.2p1_0410F.1_g147030' => 'hma', 'Hma1.2p1_2707F.1_g327190' => 'hma', 'Hma1.2p1_2707F.1_g327210' => 'hma', 'HPP92_003774' => 'vpl', 'HPP92_003775' => 'vpl', 'HPP92_003776' => 'vpl', 'HPP92_004182' => 'vpl', 'HPP92_007906' => 'vpl', 'HPP92_008949' => 'vpl', 'HPP92_011024' => 'vpl', 'HPP92_013178' => 'vpl', 'HPP92_013187' => 'vpl', 'HPP92_020874' => 'vpl', 'HPP92_024265' => 'vpl', 'HPP92_028112' => 'vpl', 'HPP92_028113' => 'vpl', 'Hund04800' => 'sun', 'Hund05753' => 'sun', 'Hund07226' => 'sun', 'Hund14328' => 'sun', 'Hund25069' => 'sun', 'Hund29933' => 'sun', 'Hund31126' => 'sun', 'Lalb_Chr04g0254751' => 'lal', 'Lalb_Chr06g0166141' => 'lal', 'Lalb_Chr08g0238101' => 'lal', 'Lalb_Chr09g0325191' => 'lal', 'Lalb_Chr10g0099981' => 'lal', 'Lalb_Chr15g0088911' => 'lal', 'Lalb_Chr16g0380651' => 'lal', 'Lalb_Chr18g0058191' => 'lal', 'Lalb_Chr18g0058211' => 'lal', 'Lalb_Chr18g0058221' => 'lal', 'Lj1A1155G51' => 'lonja', 'Lj1g0007785' => 'lja', 'Lj2A338G73' => 'lonja', 'Lj2A339G42' => 'lonja', 'Lj2g0000676' => 'lja', 'Lj2g0001426' => 'lja', 'Lj2g0003822' => 'lja', 'Lj2g0014303' => 'lja', 'Lj3g0011539' => 'lja', 'Lj4A826T51' => 'lonja', 'Lj5g0022276' => 'lja', 'Lj6A570G15' => 'lonja', 'Lj6A759T77' => 'lonja', 'Lj6C558G7' => 'lonja', 'Lj6g0010121' => 'lja', 'Lj6g0014997' => 'lja', 'Lj6g0018754' => 'lja', 'Lj8A330G11' => 'lonja', 'Lj8A331G39' => 'lonja', 'Lsat_1_v5_gn_3_23561' => 'lsa', 'Lsat_1_v5_gn_4_150741' => 'lsa', 'Lsat_1_v5_gn_4_150800' => 'lsa', 'Lsat_1_v5_gn_4_17961' => 'lsa', 'Lsat_1_v5_gn_5_69101' => 'lsa', 'Lsat_1_v5_gn_6_60501' => 'lsa', 'Lsat_1_v5_gn_6_67241' => 'lsa', 'Lsat_1_v5_gn_8_39840' => 'lsa', 'Manes.06G069100' => 'mes', 'Manes.06G069200' => 'mes', 'Manes.13G078200' => 'mes', 'Manes.14G101700' => 'mes', 'Manes.15G053200' => 'mes', 'Manes.15G187301' => 'mes', 'Manes.16G061800' => 'mes', 'Manes.16G062200' => 'mes', 'Manes.17G004600' => 'mes', 'Mapoly0008s0198' => 'mpo', 'Mapoly0008s0199' => 'mpo', 'Mapoly0013s0124' => 'mpo', 'Mapoly0059s0108' => 'mpo', 'Mapoly0064s0040' => 'mpo', 'Mapoly0090s0077' => 'mpo', 'Mapoly0135s0001' => 'mpo', 'Mapoly0633s0002' => 'mpo', 'MBI02_g18801_MAGBIO' => 'mbi', 'MBI02_g25681_MAGBIO' => 'mbi', 'MBI02_g38813_MAGBIO' => 'mbi', 'MBI04_g21144_MAGBIO' => 'mbi', 'MBI04_g21145_MAGBIO' => 'mbi', 'MBI10_g16028_MAGBIO' => 'mbi', 'MBI12_g26993_MAGBIO' => 'mbi', 'MBI14_g32920_MAGBIO' => 'mbi', 'MBI16_g36320_MAGBIO' => 'mbi', 'MCO01G355' => 'mco', 'MCO03G223' => 'mco', 'MCO14G563' => 'mco', 'MD00G1148100' => 'mdo', 'MD01G1007800' => 'mdo', 'MD01G1007900' => 'mdo', 'MD01G1098000' => 'mdo', 'MD02G1274100' => 'mdo', 'MD04G1008200' => 'mdo', 'MD05G1262000' => 'mdo', 'MD05G1262100' => 'mdo', 'MD05G1262200' => 'mdo', 'MD05G1262300' => 'mdo', 'MD10G1240300' => 'mdo', 'MD13G1042700' => 'mdo', 'MD15G1135800' => 'mdo', 'MD15G1396100' => 'mdo', 'MD16G1043700' => 'mdo', 'MD17G1274400' => 'mdo', 'Medtr1g110980' => 'mtr', 'Medtr1g111000' => 'mtr', 'Medtr2g031240' => 'mtr', 'Medtr3g096870' => 'mtr', 'Medtr5g026610' => 'mtr', 'Medtr5g057990' => 'mtr', 'Medtr6g014900' => 'mtr', 'MELO3C011570.2' => 'cme', 'MELO3C012241.2' => 'cme', 'MELO3C013786.2' => 'cme', 'MELO3C015176.2' => 'cme', 'MELO3C021782.2' => 'cme', 'MELO3C023196.2' => 'cme', 'Migut.A00539' => 'egut', 'Migut.E00333' => 'egut', 'Migut.E01361' => 'egut', 'Migut.E01363' => 'egut', 'Migut.H00818' => 'egut', 'Migut.L00279' => 'egut', 'Migut.L00577' => 'egut', 'Migut.L01070' => 'egut', 'Migut.M01937' => 'egut', 'Migut.N00379' => 'egut', 'MSTRG.15259' => 'ama', 'MSTRG.2239' => 'ama', 'MSTRG.24716' => 'ama', 'MSTRG.7565' => 'ama', 'Nitab4.5_0000030g0360' => 'nta', 'Nitab4.5_0000057g0290' => 'nta', 'Nitab4.5_0000080g0210' => 'nta', 'Nitab4.5_0000676g0200' => 'nta', 'Nitab4.5_0000691g0140' => 'nta', 'Nitab4.5_0000850g0080' => 'nta', 'Nitab4.5_0000874g0110' => 'nta', 'Nitab4.5_0000985g0070' => 'nta', 'Nitab4.5_0002444g0040' => 'nta', 'Nitab4.5_0002444g0050' => 'nta', 'Nitab4.5_0003330g0050' => 'nta', 'Nitab4.5_0003927g0050' => 'nta', 'Nitab4.5_0004680g0010' => 'nta', 'Nitab4.5_0004680g0020' => 'nta', 'Nitab4.5_0005206g0070' => 'nta', 'Nitab4.5_0006400g0010' => 'nta', 'Nitab4.5_0007902g0010' => 'nta', 'Nitab4.5_0011130g0010' => 'nta', 'Nn1g02038' => 'nnu', 'Nn1g07859' => 'nnu', 'Nn1g07860' => 'nnu', 'Nn3g17822' => 'nnu', 'Nn3g17823' => 'nnu', 'Nn4g23818' => 'nnu', 'Nn5g28418' => 'nnu', 'Nn7g37075' => 'nnu', 'Nn7g37727' => 'nnu', 'Oeu010025.1' => 'oeu', 'Oeu011022.1' => 'oeu', 'Oeu016734.1' => 'oeu', 'Oeu024450.1' => 'oeu', 'Oeu035418.1' => 'oeu', 'Oeu039273.1' => 'oeu', 'Oeu042194.1' => 'oeu', 'Oeu042195.1' => 'oeu', 'Oeu042200.2' => 'oeu', 'Oeu042203.1' => 'oeu', 'Oeu042205.1' => 'oeu', 'Oeu042206.1' => 'oeu', 'Oeu042228.5' => 'oeu', 'Oeu042230.1' => 'oeu', 'Oeu043865.1' => 'oeu', 'Oeu052705.1' => 'oeu', 'Oeu063148.5' => 'oeu', 'Os01g0130400' => 'osa', 'Os01g0911900' => 'osa', 'Os03g0216600' => 'osa', 'Os06g0675700' => 'osa', 'Os06g0676700' => 'osa', 'Os07g0420700' => 'osa', 'Os07g0421300' => 'osa', 'Peaxi162Scf00053g00618' => 'pax', 'Peaxi162Scf00195g01014' => 'pax', 'Peaxi162Scf00195g01017' => 'pax', 'Peaxi162Scf00382g00313' => 'pax', 'Peaxi162Scf00652g00421' => 'pax', 'Peaxi162Scf01156g00015' => 'pax', 'Peaxi162Scf01346g00216' => 'pax', 'PGR042G2013' => 'pgr', 'PGR044G1180' => 'pgr', 'PGR083G2732' => 'pgr', 'PGR119G0900' => 'pgr', 'PGR119G2037' => 'pgr', 'PGSC0003DMG400005353' => 'stu', 'PGSC0003DMG400007975' => 'stu', 'PGSC0003DMG400014540' => 'stu', 'PGSC0003DMG400015881' => 'stu', 'PGSC0003DMG400016018' => 'stu', 'Phvul.002G126900' => 'pvu', 'Phvul.002G127000' => 'pvu', 'Phvul.003G035400' => 'pvu', 'Phvul.006G125100' => 'pvu', 'Phvul.006G125200' => 'pvu', 'Phvul.007G026900' => 'pvu', 'Phvul.009G153400' => 'pvu', 'Potri.001G129600' => 'ptr', 'Potri.001G314700' => 'ptr', 'Potri.001G442800' => 'ptr', 'Potri.005G069000' => 'ptr', 'Potri.007G100000' => 'ptr', 'Potri.008G120000' => 'ptr', 'Potri.010G125800' => 'ptr', 'Potri.011G154200' => 'ptr', 'Potri.011G154300' => 'ptr', 'Potri.011G154500' => 'ptr', 'Pp3c10_1820' => 'ppa', 'Pp3c11_15920' => 'ppa', 'Pp3c13_11140' => 'ppa', 'Pp3c16_2470' => 'ppa', 'Pp3c18_9210' => 'ppa', 'Pp3c19_14150' => 'ppa', 'Pp3c19_4120' => 'ppa', 'Pp3c1_13060' => 'ppa', 'Pp3c1_18110' => 'ppa', 'Pp3c26_9330' => 'ppa', 'Pp3c2_18590' => 'ppa', 'Pp3c2_24620' => 'ppa', 'Pp3c2_4950' => 'ppa', 'Pp3c3_14330' => 'ppa', 'Pp3c3_28310' => 'ppa', 'Pp3c3_9200' => 'ppa', 'Pp3c4_14860' => 'ppa', 'Pp3c4_24030' => 'ppa', 'Pp3c5_4460' => 'ppa', 'Pp3c7_14360' => 'ppa', 'Pp3c7_14540' => 'ppa', 'Pp3c9_4240' => 'ppa', 'PRCOL_00001591' => 'pco', 'PRCOL_00005088' => 'pco', 'PRCOL_00007264' => 'pco', 'Prupe.1G006900' => 'ppe', 'Prupe.1G309900' => 'ppe', 'Prupe.2G051500' => 'ppe', 'Prupe.2G076500' => 'ppe', 'Prupe.4G103500' => 'ppe', 'Prupe.4G103600' => 'ppe', 'Prupe.4G277800' => 'ppe', 'Prupe.5G018900' => 'ppe', 'Psat0s3342g0120' => 'psa', 'Psat0s3342g0160' => 'psa', 'Psat1g165040' => 'psa', 'Psat1g165080' => 'psa', 'Psat1g165160' => 'psa', 'Psat2g106040' => 'psa', 'Psat2g142760' => 'psa', 'Psat2g142920' => 'psa', 'Psat5g086880' => 'psa', 'PSO017G5401' => 'pso', 'PSO063G0672' => 'pso', 'PSO339G0753' => 'pso', 'PSO339G2215' => 'pso', 'PSO384G1387' => 'pso', 'PSO384G3519' => 'pso', 'PSO384G3949' => 'pso', 'PSO478G4648' => 'pso', 'PSO541G3254' => 'pso', 'PSO675G4743' => 'pso', 'PSO675G7306' => 'pso', 'PSO700G0223' => 'pso', 'PSO782G1509' => 'pso', 'PSO782G2105' => 'pso', 'QL02p060306' => 'qlo', 'QL02p060347' => 'qlo', 'QL04p009616' => 'qlo', 'QL04p034036' => 'qlo', 'QL04p034054' => 'qlo', 'QL05p065408' => 'qlo', 'QL05p065529' => 'qlo', 'QL05p065543' => 'qlo', 'QL06p024408' => 'qlo', 'QL06p024418' => 'qlo', 'QL10p040880' => 'qlo', 'RcHm_v2.0_Chr2g0122711' => 'rch', 'RcHm_v2.0_Chr2g0122721' => 'rch', 'RcHm_v2.0_Chr4g0415411' => 'rch', 'RcHm_v2.0_Chr4g0435281' => 'rch', 'RcHm_v2.0_Chr4g0435301' => 'rch', 'RcHm_v2.0_Chr4g0435311' => 'rch', 'RcHm_v2.0_Chr4g0435321' => 'rch', 'RcHm_v2.0_Chr5g0018571' => 'rch', 'RcHm_v2.0_Chr5g0018581' => 'rch', 'RcHm_v2.0_Chr5g0018611' => 'rch', 'RcHm_v2.0_Chr5g0018621' => 'rch', 'RcHm_v2.0_Chr5g0018631' => 'rch', 'RcHm_v2.0_Chr5g0020511' => 'rch', 'RcHm_v2.0_Chr5g0020521' => 'rch', 'RcHm_v2.0_Chr7g0213741' => 'rch', 'RcHm_v2.0_Chr7g0213851' => 'rch', 'RcHm_v2.0_Chr7g0213911' => 'rch', 'RcHm_v2.0_Chr7g0213921' => 'rch', 'Rhsim09G0055700' => 'rsi', 'Rhsim10G0127500' => 'rsi', 'Rhsim11G0034700' => 'rsi', 'Rhsim12G0083200' => 'rsi', 'Rhsim13G0126700' => 'rsi', 'Sabra01G0099900' => 'sbr', 'Sabra05G0056300' => 'sbr', 'Sabra07G0082900' => 'sbr', 'Sabra08G0091000' => 'sbr', 'Sabra08G0091100' => 'sbr', 'Sabra10G0095600' => 'sbr', 'Sabra11G0145200' => 'sbr', 'Sabra11G0145300' => 'sbr', 'Sabra11G0145400' => 'sbr', 'Sabra16G0199100' => 'sbr', 'Sabra16G0299400' => 'sbr', 'Sabra16G0301100' => 'sbr', 'SabraUnG0000300' => 'sbr', 'SabraUnG0000500' => 'sbr', 'SalBow1G4905' => 'sbo', 'SalBow4G2071' => 'sbo', 'SalBow8G0212' => 'sbo', 'SalBow8G0393' => 'sbo', 'SalBow8G0396' => 'sbo', 'SalBow8G2263' => 'sbo', 'SalBow8G2658' => 'sbo', 'SalBow8G2849' => 'sbo', 'SalBow8G3041' => 'sbo', 'SalBow8G3395' => 'sbo', 'SalBow8G3858' => 'sbo', 'SalBow8G4686' => 'sbo', 'SalBow8G4899' => 'sbo', 'SalBow8G4914' => 'sbo', 'SalBow8G5197' => 'sbo', 'SalBow8G5264' => 'sbo', 'Sc04g0006470' => 'sci', 'Sc07g0008250' => 'sci', 'Sc07g0008260' => 'sci', 'Sc09g0002100' => 'sci', 'Sc13g0000130' => 'sci', 'Sc19g0000940' => 'sci', 'Sc19g0000950' => 'sci', 'Sed0002908' => 'sed', 'Sed0004774' => 'sed', 'Sed0005012' => 'sed', 'Sed0006352' => 'sed', 'Sed0008868' => 'sed', 'Sed0011005' => 'sed', 'Sed0012254' => 'sed', 'Sed0017289' => 'sed', 'Sed0017541' => 'sed', 'SEGI_01782' => 'sgi', 'SEGI_02897' => 'sgi', 'SEGI_03678' => 'sgi', 'SEGI_05111' => 'sgi', 'SEGI_05644' => 'sgi', 'SEGI_06009' => 'sgi', 'SEGI_07708' => 'sgi', 'SEGI_08630' => 'sgi', 'SEGI_09307' => 'sgi', 'SEGI_10928' => 'sgi', 'SEGI_10960' => 'sgi', 'SEGI_11022' => 'sgi', 'SEGI_11873' => 'sgi', 'SEGI_13283' => 'sgi', 'SEGI_20490' => 'sgi', 'SEGI_21462' => 'sgi', 'SEGI_26818' => 'sgi', 'SEGI_27111' => 'sgi', 'SEGI_28161' => 'sgi', 'SEGI_28662' => 'sgi', 'SEGI_28691' => 'sgi', 'SEGI_34637' => 'sgi', 'SEGI_39838' => 'sgi', 'SEGI_39844' => 'sgi', 'SEGI_41312' => 'sgi', 'SGA_v2.0_scaffold111G31354' => 'sas', 'SGA_v2.0_scaffold14G06856' => 'sas', 'SGA_v2.0_scaffold216G42389' => 'sas', 'SGA_v2.0_scaffold298G47632' => 'sas', 'SGA_v2.0_scaffold3G01798' => 'sas', 'SGA_v2.0_scaffold89G27418' => 'sas', 'SHI02565' => 'shi', 'SHI16012' => 'shi', 'SHI16014' => 'shi', 'SMO116G0166' => 'smo', 'SMO356G0486' => 'smo', 'SMO358G0339' => 'smo', 'SMO367G0911' => 'smo', 'Solyc02g069670.4' => 'sly', 'Solyc04g007150.3' => 'sly', 'Solyc04g007160.1' => 'sly', 'Solyc04g009630.3' => 'sly', 'Solyc04g049070.3' => 'sly', 'Solyc05g009470.4' => 'sly', 'Solyc08g075530.3' => 'sly', 'Solyc12g098360.2' => 'sly', 'Sopen02g018790' => 'spe', 'Sopen04g002240' => 'spe', 'Sopen04g004780' => 'spe', 'Sopen04g018470' => 'spe', 'Sopen05g005270' => 'spe', 'Sopen08g024190' => 'spe', 'Sopen12g033140' => 'spe', 'Sp1g03740' => 'spa', 'Sp2g26900' => 'spa', 'Sp3g21340' => 'spa', 'Sp3g21350' => 'spa', 'Sp5g23650' => 'spa', 'Sp6g31890' => 'spa', 'TAR381G0498' => 'tar', 'TAR409G0002' => 'tar', 'TAR625G0769' => 'tar', 'TAR627G0932' => 'tar', 'TAR629G2146' => 'tar', 'TAR629G2634' => 'tar', 'TAR636G3484' => 'tar', 'THA.LOC104800181' => 'tha', 'THA.LOC104801033' => 'tha', 'THA.LOC104812715' => 'tha', 'THA.LOC104818415' => 'tha', 'THA.LOC104821941' => 'tha', 'THA.LOC104822230' => 'tha', 'Thecc.01G139300' => 'tca', 'Thecc.02G356000' => 'tca', 'Thecc.03G325300' => 'tca', 'Thecc.04G204800' => 'tca', 'Thecc.05G000100' => 'tca', 'Thecc.06G003000' => 'tca', 'Thecc.06G052600' => 'tca', 'Thecc.10G189800' => 'tca', 'Thecc.10G189900' => 'tca', 'Thhalv10003620m.g' => 'esa', 'Thhalv10007628m.g' => 'esa', 'Thhalv10012616m.g' => 'esa', 'Thhalv10018090m.g' => 'esa', 'Thhalv10019990m.g' => 'esa', 'TPR.G10999' => 'tpr', 'TPR.G13217' => 'tpr', 'TPR.G1543' => 'tpr', 'TPR.G17247' => 'tpr', 'TPR.G17274' => 'tpr', 'TPR.G22264' => 'tpr', 'TPR.G22265' => 'tpr', 'TPR.G22266' => 'tpr', 'TPR.G25593' => 'tpr', 'TPR.G26300' => 'tpr', 'TPR.G26317' => 'tpr', 'TPR.G27807' => 'tpr', 'TPR.G33584' => 'tpr', 'TPR.G39643' => 'tpr', 'TPR.G7723' => 'tpr', 'TPR.G8926' => 'tpr', 'TWI09G0804' => 'twi', 'TWI09G0827' => 'twi', 'TWI31G1489' => 'twi', 'TWI53G1083' => 'twi', 'TWI60G0525' => 'twi', 'TWI79G1486' => 'twi', 'unitig_27.g25248' => 'ugi', 'unitig_27.g25249' => 'ugi', 'unitig_32.g11675' => 'ugi', 'unitig_736.g22245' => 'ugi', 'unitig_744.g24023' => 'ugi', 'unitig_744.g24024' => 'ugi', 'unitig_748.g7352' => 'ugi', 'unitig_899.g15156' => 'ugi', 'vmacro00078' => 'vma', 'vmacro00079' => 'vma', 'vmacro00479' => 'vma', 'vmacro01377' => 'vma', 'vmacro03478' => 'vma', 'vmacro03479' => 'vma', 'vmacro03480' => 'vma', 'vmacro12754' => 'vma', 'vmacro12755' => 'vma', 'vmacro13036' => 'vma', 'VMungo0251G1866' => 'vmu', 'VMungo0540G0041' => 'vmu', 'VMungo0540G1131' => 'vmu', 'VMungo1215G0102' => 'vmu', 'VMungo1215G1352' => 'vmu', 'VMungo1309G0925' => 'vmu', 'Zm00001eb008780' => 'zma', 'Zm00001eb096920' => 'zma', 'Zm00001eb125360' => 'zma', 'Zm00001eb143660' => 'zma', 'Zm00001eb273940' => 'zma', 'Zm00001eb305980' => 'zma', 'Zm00001eb400090' => 'zma' ) $gf_id = 'HOM05D000595' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000595' ) $data_identifier = 'HOM05D000595' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 9, 'ach' => (int) 12, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 23, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 12, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 13, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 9, 'egr' => (int) 24, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 11, 'han' => (int) 8, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 8, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 16, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 4, 'nta' => (int) 18, 'nnu' => (int) 9, 'oeu' => (int) 17, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 22, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 11, 'rch' => (int) 18, 'rsi' => (int) 5, 'sbr' => (int) 14, 'sbo' => (int) 16, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 25, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 10, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1